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Neuroscience: our relationship with intelligence

Vivid memories: looking deep into the pre-wired brain

par James Bowers, Chief editor at Polytechnique Insights
On February 18th, 2021 |
3min reading time
Emmanuel Beaurepaire
Emmanuel Beaurepaire
CNRS Research Director at the Laboratory of Optics and Biosciences of the École Polytechnique (IP Paris)*  
Key takeaways
  • Research shows that neurones in the hippocampus region of the brain are organised very early in life to provide a basis for memory.
  • Expert in multiphoton microscopy, Dr. Emmanuel Beaurepaire and his colleagues aim to study this process in a European-funded project, HOPE.
  • Researchers will first label neurones with colours in a technique developed in 2007 by a team at Harvard University, referred to as ‘brainbow’.
  • Then, they can use three-photon microscopy to study the neurones and their projections in the hippocampus as they develop over the lifetime of a mouse.

Are our brains hard­wired at birth? At least, par­tially, says science. 

Over the past few years, stud­ies in the brain region respons­ible for memory, the hip­po­cam­pus, sug­gests that the neur­ones there seem to be pre-wired dur­ing devel­op­ment 1.  This leads to the con­clu­sions that groups of neur­ones determ­ined by very early events may form the ele­ment­ary build­ing blocks of our memory. To under­stand how these build­ing blocks emerge dur­ing devel­op­ment, new advances in micro­scopy offer a way to see into the brain, allow­ing research­ers to watch how the hip­po­cam­pus changes as new exper­i­ences occur. 

Paint­ing neurones

Back in 2007, a team based at Har­vard Uni­ver­sity developed a tech­nique that allows research­ers to col­our neur­ones in a devel­op­ing brain – which they aptly dubbed brain­bow. As a res­ult, when sci­ent­ists look at them under a micro­scope, they see the brain as a strik­ing col­lec­tion of multi-col­oured neur­al cells. Oth­er than cre­at­ing images that seem more like art than sci­ence, the tech­nique allows research­ers to point out spe­cif­ic neur­ones, pre­cisely loc­at­ing the tra­ject­or­ies of their spindly axons. 

Brain­bow: Research­ers can label mouse cor­tic­al tis­sue with col­our and image it using a tech­nique known as chro­mat­ic mul­ti­photon (ChroMS) micro­scopy. (Cred­it: Adap­ted from Abde­ladim et al, Nat. Com­mun. 2019)

Using col­our labels in this way enables research­ers to probe neuro­gen­es­is, the pro­cess whereby the brain pro­duces new neur­ones. As such, each cell is essen­tially a clone of a par­ent cell so, when labelled using brain­bow, each will carry the same col­our as their ancest­or, provid­ing a way to fol­low the lin­eage of brain cells. 

Where there is HOPE…

If col­our­ing neur­al cells is the first step, the second is being able to see them in high res­ol­u­tion. After all, the brain is com­posed of dense bundles of inter­twined neur­ones – not so easy to pick out the detail. In a new European pro­ject, HOPE, set to take place from next year, Emmanuel Beaure­paire and his team at Insti­tut Poly­tech­nique de Par­is are using three-photon micro­scopy to peer deep into the hippocampus. 

Pre­vi­ous work from Pr. Rosa Coss­art at Aix-Mar­seille Uni­ver­sity, a col­lab­or­at­or of HOPE, describes the pro­cess of pre-wir­ing of the hip­po­cam­pus and the changes that come when new memor­ies occur. The pro­ject will rely on three-photon micro­scopy to look at col­oured neur­ones, spe­cific­ally fol­low­ing changes in the hip­po­cam­pus from birth in mice. 

The team, which also includes Jean Liv­et from Insti­tut de la Vis­ion, plans to pro­duce extens­ive maps of neur­on­al pro­jec­tions and study hip­po­cam­pal struc­ture to see how the cells con­nect with one anoth­er: a pro­ject which will require both human- and com­puter-power using deep learning. 

“We want to see the way brain cir­cuits are put in place dur­ing devel­op­ment and how that can be linked to exper­i­ence in the adult brain,” says Emmanuel Beaure­paire. “Of course, as always with the brain, we are restric­ted by our abil­ity to look inside it. Using three-photon micro­scopy – which we’ve been work­ing on for the past four years – we can look about a mil­li­metre deep into tis­sue of a live mouse.” 

Power­ful lasers are used to stim­u­late the fluor­es­cent mater­i­als, mean­ing the col­our­ful neur­ones can be seen with high pre­ci­sion. Not only can the tech­nique look deep­er than oth­er micro­scopy meth­ods, but its high sens­it­iv­ity also allows research­ers to see detail to the point of indi­vidu­al syn­apses. It might not seem like much, but 1 mm is cer­tainly enough to take a good look around. “Our multi-photon micro­scopy is ideal for the hip­po­cam­pus – of mice. The tech­nique is too invas­ive for a lar­ger brain like a human and, for now, we wouldn’t be able to go deep enough,” he states. 

Going bey­ond the visual 

“Neur­os­cience is the main applic­a­tion of mul­ti­photon micro­scopy, but it will go hand-in-hand with oth­er tech­niques,” he adds. “Fur­ther down the line, we also plan to use opto­gen­et­ics, a tech­nique which lets us stim­u­late or block spe­cif­ic neur­ons using light to observe the effects.” 

“At the moment we are see­ing a huge leap for­ward in our under­stand­ing of neur­os­cience – in terms of memory, con­scious­ness and learn­ing – which will no doubt lead to new solu­tions in a range of domains,” says Emmanuel Beaurepaire. 

Prob­lems that can occur in the devel­op­ing hip­po­cam­pus are known to be involved in a range of health prob­lems that can per­sist through­out life: epi­lepsy and aut­ism, to name a few. But going back to the ori­gin­al ques­tions at the begin­ning of this art­icle, the answer is one of fun­da­ment­al sci­ence. “It is about first under­stand­ing how the brain works. Later, per­haps, they can be built upon for med­ic­al or psy­chi­at­ric treatments.”

1https://​pubmed​.ncbi​.nlm​.nih​.gov/​2​7​6​3​4534/

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