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Neuroscience: our relationship with intelligence

Vivid memories : looking deep into the pre-wired brain

par James Bowers, Chief editor at Polytechnique Insights
On February 18th, 2021 |
3min reading time
Emmanuel Beaurepaire
Emmanuel Beaurepaire
CNRS Research Director at the Laboratory of Optics and Biosciences of the École Polytechnique (IP Paris)*  
Key takeaways
  • Research shows that neurones in the hippocampus region of the brain are organised very early in life to provide a basis for memory.
  • Expert in multiphoton microscopy, Dr. Emmanuel Beaurepaire and his colleagues aim to study this process in a European-funded project, HOPE.
  • Researchers will first label neurones with colours in a technique developed in 2007 by a team at Harvard University, referred to as ‘brainbow’.
  • Then, they can use three-photon microscopy to study the neurones and their projections in the hippocampus as they develop over the lifetime of a mouse.

Are our brains hard­wi­red at birth ? At least, par­tial­ly, says science. 

Over the past few years, stu­dies in the brain region res­pon­sible for memo­ry, the hip­po­cam­pus, sug­gests that the neu­rones there seem to be pre-wired during deve­lop­ment 1.  This leads to the conclu­sions that groups of neu­rones deter­mi­ned by very ear­ly events may form the ele­men­ta­ry buil­ding blocks of our memo­ry. To unders­tand how these buil­ding blocks emerge during deve­lop­ment, new advances in micro­sco­py offer a way to see into the brain, allo­wing resear­chers to watch how the hip­po­cam­pus changes as new expe­riences occur. 

Pain­ting neurones

Back in 2007, a team based at Har­vard Uni­ver­si­ty deve­lo­ped a tech­nique that allows resear­chers to colour neu­rones in a deve­lo­ping brain – which they apt­ly dub­bed brain­bow. As a result, when scien­tists look at them under a micro­scope, they see the brain as a stri­king col­lec­tion of mul­ti-colou­red neu­ral cells. Other than crea­ting images that seem more like art than science, the tech­nique allows resear­chers to point out spe­ci­fic neu­rones, pre­ci­se­ly loca­ting the tra­jec­to­ries of their spind­ly axons. 

Brain­bow : Resear­chers can label mouse cor­ti­cal tis­sue with colour and image it using a tech­nique known as chro­ma­tic mul­ti­pho­ton (ChroMS) micro­sco­py. (Cre­dit : Adap­ted from Abde­la­dim et al, Nat. Com­mun. 2019)

Using colour labels in this way enables resear­chers to probe neu­ro­ge­ne­sis, the pro­cess whe­re­by the brain pro­duces new neu­rones. As such, each cell is essen­tial­ly a clone of a parent cell so, when label­led using brain­bow, each will car­ry the same colour as their ances­tor, pro­vi­ding a way to fol­low the lineage of brain cells. 

Where there is HOPE…

If colou­ring neu­ral cells is the first step, the second is being able to see them in high reso­lu­tion. After all, the brain is com­po­sed of dense bundles of inter­t­wi­ned neu­rones – not so easy to pick out the detail. In a new Euro­pean pro­ject, HOPE, set to take place from next year, Emma­nuel Beau­re­paire and his team at Ins­ti­tut Poly­tech­nique de Paris are using three-pho­ton micro­sco­py to peer deep into the hippocampus. 

Pre­vious work from Pr. Rosa Cos­sart at Aix-Mar­seille Uni­ver­si­ty, a col­la­bo­ra­tor of HOPE, des­cribes the pro­cess of pre-wiring of the hip­po­cam­pus and the changes that come when new memo­ries occur. The pro­ject will rely on three-pho­ton micro­sco­py to look at colou­red neu­rones, spe­ci­fi­cal­ly fol­lo­wing changes in the hip­po­cam­pus from birth in mice. 

The team, which also includes Jean Livet from Ins­ti­tut de la Vision, plans to pro­duce exten­sive maps of neu­ro­nal pro­jec­tions and stu­dy hip­po­cam­pal struc­ture to see how the cells connect with one ano­ther : a pro­ject which will require both human- and com­pu­ter-power using deep learning. 

“We want to see the way brain cir­cuits are put in place during deve­lop­ment and how that can be lin­ked to expe­rience in the adult brain,” says Emma­nuel Beau­re­paire. “Of course, as always with the brain, we are res­tric­ted by our abi­li­ty to look inside it. Using three-pho­ton micro­sco­py – which we’ve been wor­king on for the past four years – we can look about a mil­li­metre deep into tis­sue of a live mouse.” 

Power­ful lasers are used to sti­mu­late the fluo­res­cent mate­rials, mea­ning the colour­ful neu­rones can be seen with high pre­ci­sion. Not only can the tech­nique look dee­per than other micro­sco­py methods, but its high sen­si­ti­vi­ty also allows resear­chers to see detail to the point of indi­vi­dual synapses. It might not seem like much, but 1 mm is cer­tain­ly enough to take a good look around. “Our mul­ti-pho­ton micro­sco­py is ideal for the hip­po­cam­pus – of mice. The tech­nique is too inva­sive for a lar­ger brain like a human and, for now, we wouldn’t be able to go deep enough,” he states. 

Going beyond the visual 

“Neu­ros­cience is the main appli­ca­tion of mul­ti­pho­ton micro­sco­py, but it will go hand-in-hand with other tech­niques,” he adds. “Fur­ther down the line, we also plan to use opto­ge­ne­tics, a tech­nique which lets us sti­mu­late or block spe­ci­fic neu­rons using light to observe the effects.” 

“At the moment we are seeing a huge leap for­ward in our unders­tan­ding of neu­ros­cience – in terms of memo­ry, conscious­ness and lear­ning – which will no doubt lead to new solu­tions in a range of domains,” says Emma­nuel Beaurepaire. 

Pro­blems that can occur in the deve­lo­ping hip­po­cam­pus are known to be invol­ved in a range of health pro­blems that can per­sist throu­ghout life : epi­lep­sy and autism, to name a few. But going back to the ori­gi­nal ques­tions at the begin­ning of this article, the ans­wer is one of fun­da­men­tal science. “It is about first unders­tan­ding how the brain works. Later, per­haps, they can be built upon for medi­cal or psy­chia­tric treatments.”

1https://​pub​med​.ncbi​.nlm​.nih​.gov/​2​7​6​3​4534/

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